Error in running automated workflow using QCPA

Hello,

I am currently testing your latest automated workflow using QCPA with my data. Initially, I tried it on the test data you provided. I followed the instructions in the worked_examples_batch_script v1.1.pdf. However, I encountered an error that stated “Undefined variable in line 50 ext=<default settings> [0];”. This error appeared multiple times, but eventually, it worked successfully and I don’t know how. When I configured all the parameters as per the manual and attempted to run it, a new error occurred in line 1334, which said “run(“Load Multispectral Image”, “select=[“+parentPath+speciesList[y]+IndividualsList[x]+mspecname+”] image=[Linear Normalised Reflectance Stack]”);”. I then re-extracted the ‘Batch QCPA.zip’ folder and placed it into the ‘micaToolbox’ folder, but the previous error in line 50 reappeared. I am curious about the cause of this issue and look forward to your response. Thank you!

Best wishes,

Constance Cynic